Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDRAKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKAGKLSGLAHCIAFANKDFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVENYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEERAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF
2QIO Chain:D ((4-256))
----LQGKTFVVMGVANQRSIAWGIARSLHNAGAKLIFTYAGERLERNVRELADTLE--GQESLVLPCDVTNDEELTACFETIKQEVGTIHGVAHCIAFANRDDLKGEFVDTSRDGFLLAQNISAFSLTAVAREAK--KVMTEGGNILTLTYLGGERVVKNYNVMGVAKASLEASVKYLANDLGQHGIRVNAISAGPIRTLSAKGVGDFNSILREIEERAPLRRTTTQEEVGDTAVFLFSDLARGVTGENIHVDSGYHILG-
General information:
TITO was launched using:
RESULT:
Template:
2QIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188209 for 2174 contacts (-86.6/contact) +
2D Compatibility (PS) -27584 + (NN) -6455 + (LL) 924
1D Compatibility (HY) -28400 + (ID) 8100
Total energy: -257824.0 ( -118.59 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_2QIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QIO-query.scw
PDB file :
Tito_Scwrl_2QIO.pdb
: