Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFRENVLEILEEITETDEVVQNTNIKLFDEGLLDSMATVQLLIEIEEKLDITVPVSEFDRDEWATPEMIITQLEALK
4H2Y Chain:D ((48-89))
---------------------------LYAAGL-SSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAI--------
General information:
TITO was launched using:
RESULT:
Template:
4H2Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13312 for 201 contacts (-66.2/contact) +
2D Compatibility (PS) -4420 + (NN) -3194 + (LL) 3988
1D Compatibility (HY) -5200 + (ID) 850
Total energy: -22988.0 ( -114.37 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_4H2Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H2Y-query.scw
PDB file :
Tito_Scwrl_4H2Y.pdb
: