Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNN-GLHITGVATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLGKFPLPLEVIPFGWKQVERKLEKEHIQTNLRKQSSGEVYVTNNGNYILDIVNQTFTDAEMWQEKLAQIPGIVEHGLFLHYVDIIICAKANGEIELIKK
4GMK Chain:B ((8-221))
----KQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSIRTAEQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLGQFPLPVEVIPYGSGTVFKRFEEKGLNPEFRKNEDGSLLHTDSDNYIIDLHLGKIENPKELGDYLINQVGVVEHGLFLDIVNTVIVGRQDG-------
General information:
TITO was launched using:
RESULT:
Template:
4GMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99413 for 1776 contacts (-56.0/contact) +
2D Compatibility (PS) -23743 + (NN) -11380 + (LL) 1372
1D Compatibility (HY) -23200 + (ID) 5350
Total energy: -161714.0 ( -91.06 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4GMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GMK-query.scw
PDB file :
Tito_Scwrl_4GMK.pdb
: