Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSEKIDYLARLWIMEAAAKIKQSFKETLDIDVKSGRNDLVTNMDKETEAFFVQQIKDHFPDHCLFGEEGMASDVTDLDGVVWILDPIDGTLNFVEQQRDFAISLAVYEDGIGRLAYIYDVTRDELYFGEKGKGATVNGRTIPKLDPAIDLKDTLLIANLSVTRKFPTMWEAVKV----SRGLRLHGAASLEYMDVATGRAGAYLSANLAPWDIAAGKIIVEELGGKVTRINGEKINMLEKGSSIVASPKIHQTLLDNYLP
3T0J Chain:D ((14-263))
--------FAQGLIQEAGIRIKQLMEQNL--------NDLVTNVDKATEDFIFDTILETYPNHQVLGEEGHGHDIDTSKGTVWVVDPIDGTLNFVHQQENFAISIGIYIDGKPYAGFVYDVMADVLYHAKVGEGAYRGSQPLKPLNDS-NLRQSIIGINPNWLTK-PILGEIFKEIVNDSRSARAYGSAALEIVSVATGNLEAYMTPRLQPWDFAGGLVILYEVNGQASNLLGEPLTISGPNSILVGNRGLHQEISNDYL-
General information:
TITO was launched using:
RESULT:
Template:
3T0J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157227 for 2046 contacts (-76.8/contact) +
2D Compatibility (PS) -25630 + (NN) -7102 + (LL) 896
1D Compatibility (HY) -18800 + (ID) 4750
Total energy: -212613.0 ( -103.92 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_3T0J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T0J-query.scw
PDB file :
Tito_Scwrl_3T0J.pdb
: