Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHEAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPTDKLILSDKDTKHPRLKDAENNFVWENK
3RYK Chain:B ((25-198))
MKVIETNFTDAKLLEPRLFGDDRGFFTESYNKKVLETLGVTHSFVQDNVSYSAEAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMYKVDEYYSADHDSGVLWNDKELAIPWPVTSPILSDKDRILPLL------------
General information:
TITO was launched using:
RESULT:
Template:
3RYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66245 for 1332 contacts (-49.7/contact) +
2D Compatibility (PS) -18580 + (NN) -5220 + (LL) 644
1D Compatibility (HY) -18800 + (ID) 4800
Total energy: -113001.0 ( -84.84 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_3RYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RYK-query.scw
PDB file :
Tito_Scwrl_3RYK.pdb
: