Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRLAEGIVIEKEKTFGTLKFSALRR-----EVKIVDDEGNVTEQVKERTFDLKCKEQGRMIQVSIPASAGVK-----NFDYNAEVEIINPIADTVATATFQGADVDWYIKAEDIVLKRPAQNQQADQKQNHDKK |
1SSF Chain:A ((7-129)) | NSFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCD----------PIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIEKEGQRKWY-KRMAVILSLEQGNRLREQYGLGPYE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SSF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 18559 for 820 contacts (22.6/contact) +
2D Compatibility (PS) -11741 + (NN) 2379 + (LL) 1200
1D Compatibility (HY) -4000 + (ID) 850
Total energy: 5547.0 ( 6.76 by residue)
QMean score : 0.280
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