Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYIKNPAKIEEKSFEIIQQIIDDIRPDYTFQNKLEEAIIKRAIHTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCYVSDPETMEIAKQHGITRSMAGIKLA---SLKDGPKLFVLGNAPTAVYKIIEMVESGQLQADAVVAVPVGFVGAAECKEEILETDIPAIVARGRKGGSNLAAAIINAILITM
1V9C Chain:B ((8-201))
---------IEEESFRIVDQ---EAGP-HGF-SPLEWPVVRRMIHATADFEYKALTRFSQGAVEAGLKAIQAGARILVDARMIACGLNPERLRLFGNEVVELLAHPEVVARAKAT--TRAEAAVAYAWEKGLLDG-AIVGVGNAPTFLLALVEAIRQGARPA-LVLGMPVGFVNVLEAKRALMEAPVPWIVTEGRKGGSTLVVAALHALI---
General information:
TITO was launched using:
RESULT:
Template:
1V9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156011 for 1620 contacts (-96.3/contact) +
2D Compatibility (PS) -21302 + (NN) -10234 + (LL) 1132
1D Compatibility (HY) -13200 + (ID) 3500
Total energy: -203115.0 ( -125.38 by residue)
QMean score : 0.694
(partial model without unconserved sides chains):
PDB file :
Tito_1V9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V9C-query.scw
PDB file :
Tito_Scwrl_1V9C.pdb
: