Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNPTKEEIQHILKKAKVIAVVGLSDKPDRTSYRVSQIMQQAGYKIIPVNPNADEILGEKTVKHLTDIEEHVDIVNVFRRSEFLPEIAEAFDQIDADVFWAQLGIANQEAFDFLTEKGYPTVMDYCIKVAYQEMD
3Q9N Chain:B ((9-87))
----TDEDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPNYEEVLGRKCYPSVLDIPDKVEVVDLF---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3Q9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29630 for 487 contacts (-60.8/contact) +
2D Compatibility (PS) -8271 + (NN) -3937 + (LL) 4948
1D Compatibility (HY) -8000 + (ID) 1550
Total energy: -46440.0 ( -95.36 by residue)
QMean score : 0.720
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9N-query.scw
PDB file :
Tito_Scwrl_3Q9N.pdb
: