Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKENKYDDKHFFEQYSQMPRSKEGLQAAGEWHEFKKLLPDFHQKVVLDLGCGFGWHCIYAAEQGAKKVVGVDLSARMLTEAKHKTTSPIVHYERRAMENIDIEPETYDIVLSSLALHYVASFNDICQKVNTNLITGGSFVFSVEHPIFTADGRQDWFTDEAGNKLHWPVDRYFNESIRTSHFLGEDVQKYHRTLTTYIQTLLKNGFQINSIIEPEPAPELKDLPEMQDEYRRPMMLIISATKN
3G5L Chain:B ((28-244))
-------------------------KAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPA------PEMQDEYRRPMMLLISATK-
General information:
TITO was launched using:
RESULT:
Template:
3G5L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107327 for 1608 contacts (-66.7/contact) +
2D Compatibility (PS) -22592 + (NN) -10781 + (LL) 1616
1D Compatibility (HY) -28400 + (ID) 8700
Total energy: -176184.0 ( -109.57 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_3G5L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G5L-query.scw
PDB file :
Tito_Scwrl_3G5L.pdb
: