Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAV--SKYVHVTSYEPIDGRKMWEGTLVSYDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF
3HFO Chain:A ((5-67))
----------------------------------------------------------------------------------DSGLPSVRQVQLLIKDQTPVEIKLL----TGDSLFGTIRWQDTDGLGLVDDS---ERSTIVRLAAIAYIT-----
General information:
TITO was launched using:
RESULT:
Template:
3HFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29474 for 362 contacts (-81.4/contact) +
2D Compatibility (PS) -7001 + (NN) -4777 + (LL) 7008
1D Compatibility (HY) -1600 + (ID) 350
Total energy: -36194.0 ( -99.98 by residue)
QMean score : 0.704
(partial model without unconserved sides chains):
PDB file :
Tito_3HFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HFO-query.scw
PDB file :
Tito_Scwrl_3HFO.pdb
: