Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKIPLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKSVEACEKAKKKNAIFHQLKMPEQESFYDELIAYVKSLEEPTNG---
1YCE Chain:A ((1-89))
MDMLFAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVAR--------QPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYANPFVGLLG
General information:
TITO was launched using:
RESULT:
Template:
1YCE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 25693 for 485 contacts (53.0/contact) +
2D Compatibility (PS) -8652 + (NN) 1856 + (LL) 676
1D Compatibility (HY) -2000 + (ID) 500
Total energy: 17073.0 ( 35.20 by residue)
QMean score : 0.035
(partial model without unconserved sides chains):
PDB file :
Tito_1YCE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCE-query.scw
PDB file :
Tito_Scwrl_1YCE.pdb
: