Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKSNTFLLITILVGLVFISFGCSEEKETPKKTAKEVQGVQIKTKEFQRVVGWLSKDSVLLQTKKSGVTYFEELNIYNEKKRPIFNTKESISEVQISPDYRNILLYSAESAEKATMRIIALNDGST-VAS-RATKPLTTTFYWNDESPEKIMFVTYSPEWNFQIENWDYTLDQLDK-IDV--ASPFISWYGDNLVISNNKDKPDDELGNLYLQDIRDSATK-----NLIV--ANIMQFAVHDNVLLTIEKNSDEKLLYDFRTLGFQNFFSY-NAAREYDELGTFVPYFDTNFDKNTFLTFVPYKSAKIGSGAKEYKLVKIDPTNKKES--TILEL-----------MDNQPILSYETGDLVLYGYL---FDKVIDTKTGKMYNLINTPTKSF |
| 3U4Y Chain:A ((7-306)) | -----------------------------------------------------TTSNFGIVVEQ--HLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDF---CQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT-VTG-LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSS---ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL-----PGTIVVSRDGSTVYVLTE------------STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTI-SGKV----------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3U4Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -23421 for 2198 contacts (-10.7/contact) +
2D Compatibility (PS) -28749 + (NN) -5728 + (LL) 6116
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -57782.0 ( -26.29 by residue)
QMean score : 0.298
|
|
|