Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------VQQINWKKNVSFRSGSPAFTLLETILSITIILSISLLIPLFFQCYNKTIQLSNIDQTTEWQLFLIQTRLELEKATNIQIDGNKLSFSNGKDLITYSKYNDLVRRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSNTQIYTSVFALPEVVSNP |
1KVE Chain:? ((19-81)) | WSLRWRMQKSTTIAAIAGCSGAATFGGLAG----GIVGCIAAGILAILQGFEVNWHNGGGGDRSNP----------V------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KVE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -16113 for 290 contacts (-55.6/contact) +
2D Compatibility (PS) -5813 + (NN) 482 + (LL) 6800
1D Compatibility (HY) -400 + (ID) 450
Total energy: -15494.0 ( -53.43 by residue)
QMean score : 0.230
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