Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDVNNVELIISAVRPEQYPETDLPEYALAGRSNVGKSSFINTMIRRKSMARISQKPGKTQTLNFYKIEEALFFVDVPGYGFAKVSKTEREKWGVMIETYITSREQLRGVIQIVDLRHKPTEDDRMMYEFLKYYDIPVIVIATKADKIPRSKWQKNAKIVRETLDFDPDDKFVLFSSETKMGKDEAWQFIKEGME
1SVW Chain:B ((1-191))
MKVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGF------EREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKK---
General information:
TITO was launched using:
RESULT:
Template:
1SVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103290 for 1470 contacts (-70.3/contact) +
2D Compatibility (PS) -19173 + (NN) -4065 + (LL) 628
1D Compatibility (HY) -21200 + (ID) 6700
Total energy: -153800.0 ( -104.63 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_1SVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVW-query.scw
PDB file :
Tito_Scwrl_1SVW.pdb
: