Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVGVPKEIKNNENRVAMTPASVFSYVNAGHTVYVEKDAGIGSNYQDADFVQAGAKIVETAKEAW-DVDMVVKVKEPIASEYTYFKEGLLLFTYLHLANEPTLAKALMESKVNSVAYETVELADHTLPLLSPMSEVAGRMAAQIGAQFLQRTNGGMGVLLGGVPGVERSEVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLRELDDIFGNQVQTLMSNDFNIETAVKKADLVIGAVLIPGAKAPKLVKEHVVKQMIPGSVLVDIAIDQGGIFETTDHVSTHDNPTYEKYGVLHYAVANMPGAVPRTSTLALTNATLPFGLKLANQGLEAAVQNDPFLLRGLNTYQGHITYKAVADSLDLPYTDSKELI |
| 2VOJ Chain:E ((1-370)) | MRVGIPTETKNNEFRVAITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLLLKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLAPMSEVAGRLAAQVGAYHLMRTQGGRGVLMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGS-RPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEGALLSERVATDLGVPFTEPASVL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VOJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -222020 for 3317 contacts (-66.9/contact) +
2D Compatibility (PS) -39933 + (NN) -11012 + (LL) -76
1D Compatibility (HY) -33200 + (ID) 10100
Total energy: -316341.0 ( -95.37 by residue)
QMean score : 0.524
|
|
|