Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VAERLVGTQAPRFEMEAVMPNQTFGKVSLEKNIEDDKWTILFFYPMDFTFVCPTEIVAISARSDEFDALNARIIGASTDTIHSHLAWTNTPIKEGGIGKLNYPLAADTNHQVASDYGVLIEEEGVALRGLFIINPKGEIQYEVVHHNNIGREVDEVLRVLQALQ----TGGLCPINWQPGEKTIV
1QQ2 Chain:B ((8-175))
-----IGHPAPSFKATAVMPDGQFKDISLSD--YKGKYVVFFFYPLDFTFVCPTEIIAFSDRAEEFKKLNCQVIGASVDSHFSHLAWINTPKKQGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITINDLPVGRSVDEILRLVQAFQFTDKHGEVCPA----------
General information:
TITO was launched using:
RESULT:
Template:
1QQ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101554 for 1253 contacts (-81.0/contact) +
2D Compatibility (PS) -17599 + (NN) -7871 + (LL) 1340
1D Compatibility (HY) -18000 + (ID) 4150
Total energy: -147834.0 ( -117.98 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_1QQ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QQ2-query.scw
PDB file :
Tito_Scwrl_1QQ2.pdb
: