Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTFLEEILAQKEVEVAKMPLEQV-AEKRKTYSFYEFLKA-----NTNTMQLIAEVKRASPSKGEINMGVNPVLQAKSYQAAGAGMISVLTDPVFFKGSIEDLREVAKNVGIPVLCKDFIISEKQLIRARNAGATVVLLIISALTEEKLITLFEQALALDLEVLVEVHDQEELAVAQKIGAQLIGVNNRNLHTFEVDIAVSERLASDFSSDACFISESGFRTAEDVARVSQK-YDAVLVGEALMREATPEVAAKSLKVTR
3TSM Chain:B ((19-265))
----EEIAAAK----ARLALDELKARTRDQSAPRGFLKALEAKRAAGQFALIAEIKKASPSKGLIRPDFDPPALAKAYEEGGAACLSVLTDTPSFQGAPEFLTAARQACSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNLRSFEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRAL----
General information:
TITO was launched using:
RESULT:
Template:
3TSM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136935 for 1993 contacts (-68.7/contact) +
2D Compatibility (PS) -26926 + (NN) -13186 + (LL) 1568
1D Compatibility (HY) -18000 + (ID) 4950
Total energy: -198429.0 ( -99.56 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_3TSM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TSM-query.scw
PDB file :
Tito_Scwrl_3TSM.pdb
: