Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------MKKILIG---GIRLYQKYISRFTPAT-CRFYPTCSAYGIEAIQTHGALKGSYLAIRRISKCHPFHKGGLDFVPPKKDKNADSEHSCKV---------------HHHH
2KT9 Chain:A ((1-116))
MAASTVHTSFILKVLWLDQNVAIAVDQIVGKGTSPLTSYFFWPRADAW--QQLKDELEAKHWIAEADRINVLNQATEVINFWQDLKNQNKQISMAEAQGKFPEVVFSGSNLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2KT9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8112 for 494 contacts (-16.4/contact) +
2D Compatibility (PS) -8957 + (NN) 1202 + (LL) 32
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -18285.0 ( -37.01 by residue)
QMean score : 0.062
(partial model without unconserved sides chains):
PDB file :
Tito_2KT9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KT9-query.scw
PDB file :
Tito_Scwrl_2KT9.pdb
: