Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVALVTGSSRGLGREIAIALAKEGYDIAVNFSRNRKKAEEVQQEIEQLGRKCVIFKANVGDVEKVRELFKAVDEEFGRLDIFINNAASGVLRPLMELEESHWDWTMNINAKALLFAGQEAAKLMQRHQSGKIISLSSIGSIRYLENYTTVGVSKAAVESLTRYLAVELAPFGIAVNAVSGGLIETDALNHFPNREELLKDAVSKTPAGRMIEPNDLVNAVLFLASEKADMIRGQTILVDGGRTLLV
3OID Chain:D ((4-250))
-NKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSLLV
General information:
TITO was launched using:
RESULT:
Template:
3OID.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110182 for 2159 contacts (-51.0/contact) +
2D Compatibility (PS) -27068 + (NN) -12294 + (LL) 208
1D Compatibility (HY) -28800 + (ID) 8550
Total energy: -186686.0 ( -86.47 by residue)
QMean score : 0.614
(partial model without unconserved sides chains):
PDB file :
Tito_3OID.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OID-query.scw
PDB file :
Tito_Scwrl_3OID.pdb
: