Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLIIAALGLTLVLSGCAPKLDSNDKVVQKDDSKAETGIMTKNQISSNYYKTVLP---YKASKSRGLVVSNI-YSRYDINELESGLMRVSQNKYSPDNYLFQEGQYLDKETLEKWLDRKSDKNPNGLNPASNGNGEN--RKPIYLAHILEQDYLKQTDKDTVALGGISIALAMNSVDYYQKEKYGDTYEQPISDSELLAQGKEMSATVLNRIRQTKGLENVPVTIAIYKQGARDAVAPGNYIAYATAN-GDSLSNWKDIDEKNYVLPSTESAKD-HKTDNDNFLNFKKAIEDYYPNFTGVVGRGRYEDGQLAELNIDIPLQFYGEAEIIGFTQYVTDLVGQHIPKTADLQVNISTSDG-PAALITRKANEDAATAHIYD |
| 3IB5 Chain:A ((7-346)) | --------------------------------------GYQTTGENNSSDYQGIIEDGEYKTSKSRGVGISQNSDNLLNLKSFEAGLTTISKDHFSTKSYIFQEGQYLNKATIQDWLGRKSSSNPEGLNPSDNGKKEANKRNPIYVQQIEEQDYMKQNNGK-LELAGMTIGIGMNQKDYYQKEQYGATYSTTISKEKRIEEGKIAAKKVLARVRQKV-GNNVPIVIAMFAQAPNDSLVGGYFYSYTVSKSGTDIGSWTETNIKSYVLPATEDNKLPNDNDSTSFDNFQKEVKNFFPNISNVTGQGQYKDKTLQGLHITITTQFYSETEITSFTQYVAQAAKSYLPSGIPVDIKINGSDGETQSFVSTTGGNGGYYTHVFG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IB5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -79128 for 2538 contacts (-31.2/contact) +
2D Compatibility (PS) -35394 + (NN) -11385 + (LL) 2520
1D Compatibility (HY) -25600 + (ID) 6400
Total energy: -155387.0 ( -61.22 by residue)
QMean score : 0.471
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