Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHLFKLDPAKNLPTNDVTKLIHSGTDGFIIGGTDNVQIEAVQNLYELLVETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHKELIKEMGEFIPWKRVTSEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGMYGDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMAKYADTIIVGNIIYEDLEKALETATIFRKKTV
1VIZ Chain:B ((10-228))
-KHVFKLDPNKDLPDEQLEILCESGTDAVIIGG------DNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSE-LLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVK----
General information:
TITO was launched using:
RESULT:
Template:
1VIZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151354 for 1790 contacts (-84.6/contact) +
2D Compatibility (PS) -22980 + (NN) -7874 + (LL) 912
1D Compatibility (HY) -22800 + (ID) 4900
Total energy: -208996.0 ( -116.76 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1VIZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIZ-query.scw
PDB file :
Tito_Scwrl_1VIZ.pdb
: