Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSVAVQAISLVDGLLLTGGQDITPQFYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGSLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTMVK
3FIJ Chain:F ((3-243))
LKPVIGITG------------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKT---
General information:
TITO was launched using:
RESULT:
Template:
3FIJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96813 for 1963 contacts (-49.3/contact) +
2D Compatibility (PS) -23287 + (NN) -5445 + (LL) 1636
1D Compatibility (HY) -29600 + (ID) 10950
Total energy: -164459.0 ( -83.78 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3FIJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FIJ-query.scw
PDB file :
Tito_Scwrl_3FIJ.pdb
: