Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKP-IIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPVIVEKIKQQNHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAKEGLEIGSPSGK-RPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSALEAEDIKQQNGADFLRVTPGIRLASDTADDQIRVVTPEKARLIGSSNIVVGRSITRANDPVAAYNQVLKEWNA
2YYU Chain:B ((4-236))
-HTPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGPAIVAFLKEQGHAVFLDLKLHDIPNTVKQAMKGLARVGADLVNVHAAGGRRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCSANEAAFIKERCGASFLAVTPGIRFADDAA----RVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN-
General information:
TITO was launched using:
RESULT:
Template:
2YYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93034 for 1866 contacts (-49.9/contact) +
2D Compatibility (PS) -25117 + (NN) -10831 + (LL) 524
1D Compatibility (HY) -23200 + (ID) 7050
Total energy: -158708.0 ( -85.05 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2YYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YYU-query.scw
PDB file :
Tito_Scwrl_2YYU.pdb
: