Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVKVDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLHYNFMKNNNIKIVAAFDVDPAKVGSVQQDIPIYHLNDMEEIVRENGVEVVILTVPADEAQVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE
2VT3 Chain:B ((7-213))
------KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKGYGYNVDYLLSFFRKTLDQDEMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDE--SVAILTVPAVAAQSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYSVLEE
General information:
TITO was launched using:
RESULT:
Template:
2VT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126418 for 1461 contacts (-86.5/contact) +
2D Compatibility (PS) -22149 + (NN) -6791 + (LL) 748
1D Compatibility (HY) -23200 + (ID) 6900
Total energy: -184710.0 ( -126.43 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_2VT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VT3-query.scw
PDB file :
Tito_Scwrl_2VT3.pdb
: