Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSLEQHIKTSDVYVAITKANKEF-DIPTLNGIAFLTGMGMDEETEKLLNALK
1TVM Chain:A ((21-112))
KRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSFGDIPLVHGMPFVSGVGIEALQNKILTILQ
General information:
TITO was launched using:
RESULT:
Template:
1TVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50533 for 586 contacts (-86.2/contact) +
2D Compatibility (PS) -9786 + (NN) -1921 + (LL) 0
1D Compatibility (HY) -10000 + (ID) 1150
Total energy: -73390.0 ( -125.24 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_1TVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TVM-query.scw
PDB file :
Tito_Scwrl_1TVM.pdb
: