Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNWTIWDKSQKVPYTLLLEADPSEKQIAKYLDKSHVFQLMHDDIVIGIICLFPLNNDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKHFIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLDQIILLKEIKS
1YVK Chain:D ((19-147))
-------------YDLLLLADPSKDIVDEYLERGECYTAWAGDELAGVYVLLKTRPQTVEIVNIAVKESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQLSLYQKCGFRIQAIDHDFFLRHY-DEDIFENGIQCRD----------
General information:
TITO was launched using:
RESULT:
Template:
1YVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73309 for 884 contacts (-82.9/contact) +
2D Compatibility (PS) -14236 + (NN) -8266 + (LL) 2040
1D Compatibility (HY) -11600 + (ID) 2550
Total energy: -107921.0 ( -122.08 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_1YVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YVK-query.scw
PDB file :
Tito_Scwrl_1YVK.pdb
: