Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFTKKRGLMLLAAVLLTVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQ-----KNQFKGFKYVSNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIK--NVPDKIKYLAEK
2K5Q Chain:A ((4-92))
---------------------------NRMGKDEYYVQITVDGKEVHSKADNGQKYKDYEYKLTGFDKDGKEKELEFTAQKNLRKEAFLRVYHSDKKGVSAWEEVKKDELPAKVKE----
General information:
TITO was launched using:
RESULT:
Template:
2K5Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19634 for 458 contacts (-42.9/contact) +
2D Compatibility (PS) -8725 + (NN) -226 + (LL) 3716
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -30869.0 ( -67.40 by residue)
QMean score : 0.669
(partial model without unconserved sides chains):
PDB file :
Tito_2K5Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2K5Q-query.scw
PDB file :
Tito_Scwrl_2K5Q.pdb
: