Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKIKSFLGKSLTLVVLGVFLFSGWKIGMELYENKHNQTILDDAKAVYTKDAATTNVNGEVRDELRDLQKLNKDMVGWLTIIDTEIDYPILQSKDNDYYLHHNYKNEKARAGSIFKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLVAHPTFSYESGLTNYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSVYTSNVKVSGKDRIITLSTCDTEKDYEKGRMVIQGKLVTK
4LFD Chain:C ((29-213))
-----------------------------------------------------------VRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGKTNHDYLNLDFEREHRRKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSFYEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDVNVTVKDRIMTLSTCEDAYSETTKRIVVVAKII--
General information:
TITO was launched using:
RESULT:
Template:
4LFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67836 for 1426 contacts (-47.6/contact) +
2D Compatibility (PS) -19679 + (NN) -6220 + (LL) 4324
1D Compatibility (HY) -19600 + (ID) 3650
Total energy: -112661.0 ( -79.00 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_4LFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LFD-query.scw
PDB file :
Tito_Scwrl_4LFD.pdb
: