Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LSQFDEVIPRIGTNSEKWDGAEELFGRKDIIPMWVADMDFRAPKPVLDAFQRQIDHGIFGYSTKSKALVEAVIDWNKEQHQFEIDPSTLFFNGAVVPTISLAIRSLTNEGDAVLMVSPIYPPFFNVTKATERKVVMSPL-IYENRQYRMDFNDLEKRMKEENVKLFLLCNPQNPGGRCFTKEELVELAKLCEKYQIPIVSDEIHADLVMKNHKHVPMMVAAPFYQDQIITLMAATKTFNLAAIKASYYIITN-KDYQTRFAAEQKYATTNGLNVFGIVGTEAAYRHGAPWLKELKEYIYSNYEYVKAELEKEVPEVGVTDLEATYLMWLDCRALPKDEKTIYTDLIEAG-VGVQMGSGFGHSGKGFVRFNIACPKETLEKSVKLLIQGLKK |
| 4DQ6 Chain:B ((7-383)) | --NFNEIVDRSNNFSSKWSEMEKKYGTNDLLPMWVADMDFKAAPCIIDSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRN-NCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGGSGYQRINLACPRSMLEEAL--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DQ6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238879 for 3153 contacts (-75.8/contact) +
2D Compatibility (PS) -39882 + (NN) -10720 + (LL) 1220
1D Compatibility (HY) -40400 + (ID) 7150
Total energy: -335811.0 ( -106.51 by residue)
QMean score : 0.584
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