Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
4O8C Chain:B ((7-260))
MRKYNGYLIDLDGTMYRGTERIDAASGFIKELNRLHIPYLFVTNNSTRTPEQVADKLVSLDIPATPEQIFTSSMATANYVYDLDQNAMIYFIGEEGLYKALKEKGFSFADENADVVIVGLDREVTYEKLAVACLAVRNGAKLISTNGDLALPTERGFMPGNGAFTALISYSTQVKATFVGKPEPIIMEQALKVLGTNKNETIMVGDNYDTDILAGIRAGLDTLLVHTGVTTVEKLKEYKQQPTYSMKSLDDWKF-
General information:
TITO was launched using:
RESULT:
Template:
4O8C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148438 for 2233 contacts (-66.5/contact) +
2D Compatibility (PS) -27925 + (NN) -14686 + (LL) -80
1D Compatibility (HY) -26800 + (ID) 6850
Total energy: -224779.0 ( -100.66 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_4O8C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O8C-query.scw
PDB file :
Tito_Scwrl_4O8C.pdb
: