Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQIHLHLKMDGDKIVAAKFTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEMVQGHDHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAI---FEKEGTK
4EB5 Chain:D ((2-122))
---------YSDKVFDHFQNPRNVGKIEDADGVGTVGNPVCGDLMTIYIKVKDNRIEDIKFQTFGCAAAIATSSMATEMAKGKTIEEALKITRDAV----------------AEALGGLPK--QKMHCSNLAADALRRAIVDYFRKNG--
General information:
TITO was launched using:
RESULT:
Template:
4EB5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61632 for 943 contacts (-65.4/contact) +
2D Compatibility (PS) -12646 + (NN) -5255 + (LL) 1596
1D Compatibility (HY) -6000 + (ID) 2350
Total energy: -86287.0 ( -91.50 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_4EB5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EB5-query.scw
PDB file :
Tito_Scwrl_4EB5.pdb
: