Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------MKKHIV-----LIVVACIT---VIAVFMYIVQINNSELKYQNRAQIKIASQMASQNEQTDNSIVSEITYK--------
1Y02 Chain:A ((20-114))
PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQPRLCLLCQRFRATAFQREELMKMKVKDLRDYLSLHDISTEMCREKEELVLLVLGQQPV
General information:
TITO was launched using:
RESULT:
Template:
1Y02.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23148 for 353 contacts (-65.6/contact) +
2D Compatibility (PS) -6504 + (NN) -185 + (LL) 0
1D Compatibility (HY) -400 + (ID) 200
Total energy: -30437.0 ( -86.22 by residue)
QMean score : 0.217
(partial model without unconserved sides chains):
PDB file :
Tito_1Y02.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y02-query.scw
PDB file :
Tito_Scwrl_1Y02.pdb
: