Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKG
4RYF Chain:N ((3-194))
--LIPTVI--------AYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKS----
General information:
TITO was launched using:
RESULT:
Template:
4RYF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127256 for 1382 contacts (-92.1/contact) +
2D Compatibility (PS) -19781 + (NN) -6771 + (LL) 404
1D Compatibility (HY) -26400 + (ID) 9200
Total energy: -189004.0 ( -136.76 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_4RYF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RYF-query.scw
PDB file :
Tito_Scwrl_4RYF.pdb
: