Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
4QBI Chain:B ((1-214))
MNLVLMGLPGAGKGTQAEKIVEAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLGKDDCERGFLLDGFPRTVAQAEALEEILEDIGRKIDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEETVAKRLEVNMKQMKPLLDFYEQKGYLRNVNGEQDIEKVFADVRELLGG-
General information:
TITO was launched using:
RESULT:
Template:
4QBI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58439 for 1588 contacts (-36.8/contact) +
2D Compatibility (PS) -23373 + (NN) -15439 + (LL) 132
1D Compatibility (HY) -24800 + (ID) 7500
Total energy: -129419.0 ( -81.50 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_4QBI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QBI-query.scw
PDB file :
Tito_Scwrl_4QBI.pdb
: