Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLHELKPSEGSRKERNRVGRGTGSGNGK-TSGRGHKGQKARSGGGVRLGFEGGQLPLFRRIPKRGFTNINR--KEFAIVNLDVLN-RFE---------DGTEVTPELLVETGIIRNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI
1VQ8 Chain:L ((3-144))
-----------SKKKRQRGSRTHGGGSHKNRRGAGHRGGRGDAGR------DKHEFHNHEPLGKSGFKRPQKVQEEAATIDVREIDENVTLLAADDVAE--FRVDVRDVVEEA-D--DADYVKVLGAGQVRHELTLIADDFSEGAREKVEGAGGSVELT
General information:
TITO was launched using:
RESULT:
Template:
1VQ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8720 for 732 contacts (-11.9/contact) +
2D Compatibility (PS) -13346 + (NN) -4712 + (LL) 832
1D Compatibility (HY) -3600 + (ID) 1800
Total energy: -31346.0 ( -42.82 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_1VQ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VQ8-query.scw
PDB file :
Tito_Scwrl_1VQ8.pdb
: