Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LKAVVKTNPGYDQMELKDVEEPQVYGDKVKIKVAFTGICGSDIHTFK-GEYKNP--TTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKEHDYNLCSNRRGIGTQANGSFAEFVLSREESCHVLDERISLEAAALTEPLACCVHSALEKTTIRPDDTVLVFGPGPIGLLLAQVVKAQGATVIMAGITKDSD-RLRLAKELGMDRIVDTLKEDLAEVVLGMTGGYGAERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDEESII---QREIAYIGSRSQKPSSWILALDLLANGKIDTDKMITKVY-GLDDWREAFEAVMAGNEIKVLVKS |
| 3GFB Chain:D ((5-344)) | MQAIMKTKPAYGA-ELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEVGPGVEDLQVGDYISVETHI-VCGKCYACKHNRYHVCQNTKIFGVDMDGVFAHYAIVPAKNAWKNPKDMPPEYAALQEPLGNAVDTVLAGPIA--GRSTLITGAGPLGLLGIAVAKASGAYPVI--VSEPSEFRRKLAKKVGADYVVNPFEEDPVKFVMDITDGAGVEVFLEFSGAPKALEQGLKAVTPGGRVSLLGLFP-REVTIDFNNLIIFKALEVHGITGRHLW-ETWYTVSSLIQSGKLNLDPIITHKYKGFDKFEEAFELMRAGKTGKVV--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GFB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165456 for 2893 contacts (-57.2/contact) +
2D Compatibility (PS) -35504 + (NN) -12000 + (LL) 436
1D Compatibility (HY) -21600 + (ID) 6000
Total energy: -240124.0 ( -83.00 by residue)
QMean score : 0.408
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