Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VRHVVIFCASILNRFFASVECVKRRLNPLEAYLVVMSNAER------------------------------AGGLVLAATPKMKQEHHIKTGSRMYELPTWDKRIIIAPPRMKLYLKVNAMIQAIFRRYVPAEFIHVYSIDECFLDVTGSHLLFG-STEEIVRKIQRDILEELRLYVTVGIGDNPLLAKLALDNVAKNRDDGIAEWRYEHVPETIWKIRHLDDVCGIGRRTAVRLQKMGIFNMYQLSQTPPQVLKNVMGV-VGEQLYYHAHGIDYSLLNEKYVPVSKSYGKSQILEKDYHVPAEVEIVIREMVEEVAMRLRQNHVDTAVIHLSVGYSKYS------------IKKGFSHQAKIPP-TSSSHALIPYFLQLFRRYDE-REPVRSIAISCGKITLKTGLQLNLFEDFTQTLNHEQLEITVDKIRSRYGFKSLMHASSLLNGATGLKRSEMVGGHKG |
| 3GQC Chain:A ((416-828)) | --QSCIMHVD-MDCFFVSVGIRNRPDL-KGKPVAVTSNRGTGRAPLRPGANPQLEWQYYQNKILKGIDSVLSRAEIASCSYEAR-QLGIKNGMFFGHAKQLCPNLQAVPYDFHAYKEVAQTLYETLASYTHNI--EAVSCDEALVDITEILAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATRKA---KPDGQYHLKPEEVDDFIRGQ-LVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLDDRPVRTEK--ERKSVSAEINYGIRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRLTLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDNAKIIGKAMLNMFHTMKLNISDMRGVGIHVNQLVPTN----------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GQC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239879 for 2649 contacts (-90.6/contact) +
2D Compatibility (PS) -37137 + (NN) -11359 + (LL) 4596
1D Compatibility (HY) -7600 + (ID) 3350
Total energy: -294729.0 ( -111.26 by residue)
QMean score : 0.451
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