Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYQVGSLVEMK---KPHACVIKETGKKANQWKVLRVGADIKIQCTNCQHVIMMSRYDFERKLKKVLQP
1UB4 Chain:A ((7-37))
-PDMGDLIWVDFDPGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKS
General information:
TITO was launched using:
RESULT:
Template:
1UB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6376 for 87 contacts (-73.3/contact) +
2D Compatibility (PS) -2318 + (NN) 1049 + (LL) 208
1D Compatibility (HY) -1600 + (ID) 150
Total energy: -9187.0 ( -105.60 by residue)
QMean score : 0.736
(partial model without unconserved sides chains):
PDB file :
Tito_1UB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UB4-query.scw
PDB file :
Tito_Scwrl_1UB4.pdb
: