Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNQLIYTGKAKDIYSTKDENVIRTVYKDQATMLNGARKETIDGKGALNNQISSLIFEKLNMAGVVTHYIEQISKNEQLNKKVDIIPLEVVLRNVTAGSFSKRFGVEEGRVLETPIVEFYYKNDDLNDPFINDEHMKFLGIVNDEEIAYLKGETRRINELLKDWFAQIGLNLIDFKLEFGFDKDGKIILADEFSPDNCRLWDAEGNHMDKDVFRRDLGSLTDVYQVVLEKLIAL
4NYE Chain:B ((22-254))
-SKQLIYSGKAKDIYTTEDENLIISTYKDQATAFNGVKKEQIAGKGVLNNQISSFIFEKLNVAGVATHFVEKLSDTEQLNKKVKIIPLEVVLRNYTAGSFSKRFGVDEGIALETPIVEFYYKNDDLDDPFINDEHVKFLQIAGDQQIAYLKEETRRINELLKVWFAEIGLKLIDFKLEFGFDKDGKIILADEFSPDNCRLWDADGNHMDKDVFRRGLGELTDVYEIVWEKLQEL
General information:
TITO was launched using:
RESULT:
Template:
4NYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71458 for 1826 contacts (-39.1/contact) +
2D Compatibility (PS) -25102 + (NN) -6776 + (LL) 208
1D Compatibility (HY) -30000 + (ID) 9200
Total energy: -142328.0 ( -77.95 by residue)
QMean score : 0.403
(partial model without unconserved sides chains):
PDB file :
Tito_4NYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NYE-query.scw
PDB file :
Tito_Scwrl_4NYE.pdb
: