Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIAVFASANGSNFQVI-----AEQFP--VSFVFSDHRDAYVLERAQNLAIPSFAFELKEFENKAAYEQAVVDLLDKHEIDLVCLAGYMKIVGETLLSAYEGRIINIHPTYLPEFPGAHGIKDAWEAGVDQSGVTIHWVDSGVDTGQVIQQVHVPRLADDSLESFETRIHETEYQLYPAVLDSLGIKRK
3P9X Chain:B ((4-186))
-RVAIFASGSGTNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPSLLPAFPGLHAIEQAIRANVKVTGVTIHYVDEGMDTGPIIAQEAVSIEEEDTLETLTTKIQAVEHRLYPATLHKLLSKAE
General information:
TITO was launched using:
RESULT:
Template:
3P9X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129598 for 1339 contacts (-96.8/contact) +
2D Compatibility (PS) -19348 + (NN) -10373 + (LL) 208
1D Compatibility (HY) -18000 + (ID) 4300
Total energy: -181411.0 ( -135.48 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3P9X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3P9X-query.scw
PDB file :
Tito_Scwrl_3P9X.pdb
: