Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPHLSKEAFKKQIKNGIIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRANSVRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSGYTDYSRQEEGPDIELLNKLCQA-GIDVIAEGKIHTPKQANEINHIGVAGIVVGGAITRPKEIAERFISGLS
4UTW Chain:D ((14-225))
------------VKGNLIVSCQALSDEPLH--SSFIMGRMAIAAKQGGAAAIRAQGVNDINEIKEVTKLPIIGIIKRNYDDSEIYITPTMKEVDELLKTDCEMIALDATKRKRPNGENVKDLVDAIHAK--GRLAMADISTLEEGIEAEKLGFDCVSTTLSGYTPYSKQSNSVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITRPQQITKRFTDIL-
General information:
TITO was launched using:
RESULT:
Template:
4UTW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129724 for 1822 contacts (-71.2/contact) +
2D Compatibility (PS) -22704 + (NN) -10777 + (LL) 1264
1D Compatibility (HY) -18800 + (ID) 5500
Total energy: -186241.0 ( -102.22 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_4UTW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UTW-query.scw
PDB file :
Tito_Scwrl_4UTW.pdb
: