Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVPKRVKHRREFRGKMRGEAKGG------KEVSFG----------EYGLQATTSHWITNRQIEAARIAMTRYMKRGG-----KVWIKIFPHKSYTAKAIGVRMGSGKGAPEGWVAPVKRGKVMFEIAGVSEEVAREALRLASHKLPVKCKFVKREAE--
1JJ2 Chain:H ((1-167))
--KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKDGMR--APFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
General information:
TITO was launched using:
RESULT:
Template:
1JJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42079 for 934 contacts (-45.1/contact) +
2D Compatibility (PS) -14227 + (NN) -2275 + (LL) 420
1D Compatibility (HY) -2000 + (ID) 1650
Total energy: -61811.0 ( -66.18 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1JJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJ2-query.scw
PDB file :
Tito_Scwrl_1JJ2.pdb
: