Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANRLKEKYTNEVVPALTEKFNYSSVMAVPKVEKIVLNMGVGDAVSNAKNLEKAAAELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLDKLVSVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFDDVDKVRGLDIVIVTTANTDEESRELLKGLGMPFAK
1MJI Chain:B ((7-182))
----LKRKYYEEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALITGQKPAVTRAKKSISNFKLRKGMPIGLRVTLRRDRMWIFLEKLLNVALPRIRDFRGLNPNSFDGRGNYNLGLREQLIFPEITYDMVDALRGMDIAVVTTAETDEEARALLELLGFPFRK
General information:
TITO was launched using:
RESULT:
Template:
1MJI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64452 for 1288 contacts (-50.0/contact) +
2D Compatibility (PS) -18693 + (NN) -6977 + (LL) 372
1D Compatibility (HY) -20800 + (ID) 5300
Total energy: -115850.0 ( -89.95 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_1MJI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MJI-query.scw
PDB file :
Tito_Scwrl_1MJI.pdb
: