Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4W5J Chain:D ((6-217))
MNLLIMGLPGAGKGTQAAKIVEQFHVAHISTGDMFRAAMANQTEMGVLAKSYIDKGELVPDEVTNGIVKERLSQDDIKETGFLLDGYPRTIEQAHALDKTLAELGIELEGIINIEVNPDSLLERLSGRIIHRVTGETFHKVFNPPV-YKEEDYYQREDDKPETVKRRLDVNIAQGEPIIAHYRAKGLVHDIEGNQDINDVFSDIEKVLTNLK
General information:
TITO was launched using:
RESULT:
Template:
4W5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82948 for 1622 contacts (-51.1/contact) +
2D Compatibility (PS) -23173 + (NN) -12861 + (LL) -76
1D Compatibility (HY) -25600 + (ID) 8900
Total energy: -153558.0 ( -94.67 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_4W5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W5J-query.scw
PDB file :
Tito_Scwrl_4W5J.pdb
: