Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLEKFIDHLNVEEVLFTFFTKLISILLLIIAFVIVR--QVINYLFEKTVNRS-LAFSRQKVARQKTLAKLSHNVLNYTLYFFLFYWILSILGVPISSLLAGAGIAGVAIGLGAQGFLSDVVNGFFILLENQFDVGDIINVGTVSGTVTNVGIRTTQIHDFDGTLHFIPNRNITIVSNKSRSNMRAQIDIPLFVHTNLDQISDIVTKINEEYVSKHPAIVGEPTVFGPTTNANGQFVYRINIFTQNGAQFDIYAEFYKLYQKAILEEGIDLPTYNFSNNHSR
3T9N Chain:C ((27-268))
----------------------------ILIIAFIGIKFADFLIYRFYKLYSKSKIQLPQRKI---DTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTINGISGTVEEIGLRVTKIRGFSDGLHIIPNGEIKMVTNLTKDSMMAVVNIAFPIDEDVDKIIEGLQEICEEVKKSR-----GPTVLGITDMQDSKLVIMVYAKTQPMQKWAVERDIRYRVKKMFDQKNISFPYPRTTVILSE
General information:
TITO was launched using:
RESULT:
Template:
3T9N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115481 for 1472 contacts (-78.5/contact) +
2D Compatibility (PS) -25148 + (NN) -14013 + (LL) 3864
1D Compatibility (HY) -27200 + (ID) 3950
Total energy: -181928.0 ( -123.59 by residue)
QMean score : 0.427
(partial model without unconserved sides chains):
PDB file :
Tito_3T9N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T9N-query.scw
PDB file :
Tito_Scwrl_3T9N.pdb
: