Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELEVFAGQEKSELSMIEVARAILEQRGRDNEMYFSDLVNDIQTYLGKSDSAIRESLPFFYSDLNTDGSFIPLGENKWGLRSWYAIDEIDEEIITLEEDEDGAPKRKKKRVNAFMDGDEDAIDYNDDDPEDEDFTEETPSLEYDEENPDDEKSEVESYDSEINEIIPDEDLDEDVEINEEDDEEEEEEEEV
4NC8 Chain:B ((5-81))
-----YSQEELKEMALVEIAHELFEEHKKP--VPFQELLNEIASLLGVKKEELGDRIAQFYTDLNIDGRFLALSDQTWGLRSWY-----------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4NC8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30035 for 434 contacts (-69.2/contact) +
2D Compatibility (PS) -8035 + (NN) -1834 + (LL) 5964
1D Compatibility (HY) -9600 + (ID) 1350
Total energy: -44890.0 ( -103.43 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_4NC8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NC8-query.scw
PDB file :
Tito_Scwrl_4NC8.pdb
: