Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVRGFELVSQFSNKELLPKRETAHAAGYDLKVA----KKTVIEPGEITLVPTGIKAHMQPGEVLYLYDRSSNPRKKGIVLINSVGVIDGDYYNNQVNEGHIFAQMQNITDQAVILEEGERIVQAVFAPFLLADDDQ----ATGMRTGGFGSTGK
3MBQ Chain:C ((45-172))
------------------LPAYETAGSAGMDLRAAVAEDRQIVLLPGRRTLVPTGLILEIPQGYEVQIRPRSGLAFKNGITCLNTPGTIDSDY------RGEVKVLLINLGDDDFRIERGMRIAQAVFAPVIQPKIEERAKI----GAGGF-----
General information:
TITO was launched using:
RESULT:
Template:
3MBQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51446 for 738 contacts (-69.7/contact) +
2D Compatibility (PS) -12369 + (NN) -2873 + (LL) 1568
1D Compatibility (HY) -6000 + (ID) 2350
Total energy: -73470.0 ( -99.55 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_3MBQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MBQ-query.scw
PDB file :
Tito_Scwrl_3MBQ.pdb
: