Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLLDMLSYDFMQRALLAVVAISIFAPILGIFLILRRQSLMSDTLSHVSLAGVALGVVLGISPTWSTIFVVTLAAVVLEYLRTVYKHYMEISTAILMSMGLAISLIVMSKAHNVGNVSLEQYLFGSIITIGKEQVIALFVIALITFILTILFIRPMYILTFDEDTAFVDGLPVRTMSILFNVVTGIAIALTIPAAGALLVSTIMVLPASIAMRLGRNFKTVIFLGMLIGFVGMVAGIFLSYYWETPASATITMIFIGIFLLVSLVGLLRKR |
1JDM Chain:A ((1-31)) | ------------------------------------------------------------------------------------------------------------------------------MGINTRELFLNFTIVLITVILMWLLVRSYQY----------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JDM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20528 for 120 contacts (-171.1/contact) +
2D Compatibility (PS) -3056 + (NN) -851 + (LL) 23196
1D Compatibility (HY) -5600 + (ID) 500
Total energy: -7339.0 ( -61.16 by residue)
QMean score : 0.438
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