Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIKLTPEELRISAKKYTTGSQSITDVLTVLTQEQAVIDENWDGTAFDSFEAQFNELSPKITQFAQLLEDINQQLLKVADVVEQTDSDIASQINK
2VRZ Chain:B ((9-90))
------SPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQ--------
General information:
TITO was launched using:
RESULT:
Template:
2VRZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5024 for 466 contacts (-10.8/contact) +
2D Compatibility (PS) -8844 + (NN) -2543 + (LL) 1296
1D Compatibility (HY) -5200 + (ID) 2000
Total energy: -22315.0 ( -47.89 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_2VRZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VRZ-query.scw
PDB file :
Tito_Scwrl_2VRZ.pdb
: