Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFHTKSLIQMAMMATLLVVLGFIPALPLGFIPVPIVLQNLGVMMAGVILGGRKGSLSILLFFLVGLVIPVFSGLRSTIPVLTGPTAGYVIAWLFVPLLISYGVKLVNKKNFIAIFLIVWLAGVLFVDVAGAVWLASYTNIPLDKSLLQNLVF----IPGDTIKAIIAAVVAVKYKDSFFLTEK
2B1G Chain:C ((393-431))
------------------------------------------------------------------------------------------------------------------------------------------NAVIDRSLFKNIVTKNKTLPESAVRDLIVASIAVKYTQSNSVCYA
General information:
TITO was launched using:
RESULT:
Template:
2B1G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16956 for 145 contacts (-116.9/contact) +
2D Compatibility (PS) -3597 + (NN) -534 + (LL) 12496
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -12891.0 ( -88.90 by residue)
QMean score : 0.649
(partial model without unconserved sides chains):
PDB file :
Tito_2B1G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B1G-query.scw
PDB file :
Tito_Scwrl_2B1G.pdb
: